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First name(s):	Meritxell
Last name(s):	Bach Cuadra

Nataliia Molchanova, Raina Vatsal, Andrey Malinin, Francesco La Rosa, Adrien Depeursinge, Mark Gales, Cristina Granziera, Henning Müller, Mara Graziani and Meritxell Bach Cuadra, Structural-based uncertainty in deep learning across anatomical scales: Analysis in white matter lesion segmentation (2025), in: Computers in Biology and Medicine

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Federico Spagnolo, Pedro M. Gordaliza, Aarushi Bhardwaj, Po-Jui Lu, Mario Ocampo-Pineda, Meritxell Bach Cuadra, Matthias Weigel, Esther Ruberte, Xinjie Chen, Tommaso Sirito, Alessandro Cagol, Vincent Andrearczyk, Adrien Depeursinge and Cristina Granziera, A multi-modal deep learning network for the classification of paramagnetic rim and remyelinated lesions in multiple sclerosis (2026), in: Multiple Sclerosis Journal, 32:6(13524585261421491)

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Federico Spagnolo, Nataliia Molchanova, Roger Schaer, Meritxell Bach Cuadra, Mario Ocampo-Pineda, Lester Melie-Garcia, Cristina Granziera, Vincent Andrearczyk and Adrien Depeursinge, Instance-level quantitative saliency in multiple sclerosis lesion segmentation (2026), in: Nature Scientific Reports, 16(6917)

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Nataliia Molchanova, Alessandro Cagol, Mario Ocampo-Pineda, Po-Jui Lu, Matthias Weigel, Xinjie Chen, Erin S. Beck, Charidimos Tsagkas, Daniel S. Reich, Colin Vanden Bulcke, Anna Stolting, Serena Borrelli, Pietro Maggi, Sebastian Baez Lugo, Delphine Ribes Lemay, Adrien Depeursinge, Cristina Granziera, Henning Müller, Pedro M. Gordaliza and Meritxell Bach Cuadra, A comparative study of deep learning for cortical lesion MRI segmentation with explainability analysis in multiple sclerosis (2026), in: NeuroImage: Clinical, 50(104007)

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Nataliia Molchanova, Raina Vatsal, Andrey Malinin, Francesco La Rosa, Henning Müller, Mark Gales, Cristina Granziera, Mara Graziani and Meritxell Bach Cuadra, NOVEL STRUCTURAL-SCALE UNCERTAINTY MEASURES AND ERROR RETENTION CURVES: APPLICATION TO MULTIPLE SCLEROSIS (2023), in: Proceedings of International Symposium of Biomedical Imaging 2023

Jonas Richiardi, ravano veronica, Nataliia Molchanova, Pedro M. Gordaliza, Tobias Kober and Meritxell Bach Cuadra, Chapter 6 - Domain shift, domain adaptation, and generalization: A focus on MRI, Elsevier, 2025

Federico Spagnolo, Aarushi Bhardwaj, Pedro M. Gordaliza, Po-Jui Lu, Mario Ocampo-Pineda, Meritxell Bach Cuadra, Xinjie Chen, Batuhan Ayci, Alessandro Cagol, Vincent Andrearczyk, Adrien Depeursinge and Cristina Granziera, Deep-PRL: a deep learning network for the identification of paramagnetic rim lesions in multiple sclerosis, in: ISMRM 2025, 2025

Federico Spagnolo, Nataliia Molchanova, Mario Ocampo-Pineda, Lester Melie-Garcia, Meritxell Bach Cuadra, Cristina Granziera, Vincent Andrearczyk and Adrien Depeursinge, Exploiting XAI maps to improve MS lesion segmentation and detection in MRI, in: Workshop on Interpretability of Machine Intelligence in Medical Image Computing at MICCAI, 2025

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Federico Spagnolo, Pedro M. Gordaliza, Po-Jui Lu, Mario Ocampo-Pineda, Xinjie Chen, Matthias Weigel, Maxence Wynen, Martina Absinta, Pietro Maggi, Meritxell Bach Cuadra, Vincent Andrearczyk, Adrien Depeursinge and Cristina Granziera, Explainability in automatic Paramagnetic Rim Lesion classification, in: 40th Congress Of The European Committee For Treatment And Research In Multiple Sclerosis (ECTRIMS), 2024

Federico Spagnolo, Nataliia Molchanova, Roger Schaer, Mario Ocampo-Pineda, Meritxell Bach Cuadra, Lester Melie-Garcia, Cristina Granziera, Vincent Andrearczyk and Adrien Depeursinge, Instance-level explanations in multiple sclerosis lesion segmentation: a novel localized saliency map, in: ISMRM 2024, 2024

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Federico Spagnolo, Roger Schaer, Vincent Andrearczyk, Nataliia Molchanova, Mara Graziani, Henning Müller, Meritxell Bach Cuadra, Cristina Granziera and Adrien Depeursinge, FLAIR vs MPRAGE contribution to white matter lesion automatic segmentation in MS using localized saliency maps, in: Bern Interpretable AI Symposium (BIAS), 2023

Federico Spagnolo, Adrien Depeursinge, Vincent Andrearczyk, Pascal Benkert, Stefanie Müller, Lutz Achtnichts, Jochen Vehoff, Giulio Di Santo, Oliver Findling, Andrew Chan, Anke Salmen, Caroline Pot, Claire Bridel, Chiara Zecca, Tobias Johannes Derfuss, Johanna M. Lieb, Luca Remonda, Franca Wagner, Maria-Isabel Vargas Gomez, Renaud Du Pasquier, Patrice Lalive, Emanuele Pravatà, Johannes Weber, Claudio Gobbi, David Leppert, Nataliia Molchanova, Meritxell Bach Cuadra, Po-Jui Lu, Mario Ocampo-Pineda, Lester Melie-Garcia, Cagol Alessandro, Ludwig Kappos, Jens Kuhle and Cristina Granziera, Identification of paramagnetic rim lesions using conventional MRI - a deep learning approach, in: 39th Congress Of The European Committee For Treatment And Research In Multiple Sclerosis (ECTRIMS), 2023

Raina Vatsal, Nataliia Molchanova, Mara Graziani, Andrey Malinin, Henning Müller, Meritxell Bach Cuadra and Mark Gales, Tackling Bias in the Dice Similarity Coefficient: Introducing nDSC for White Matter Lesion Segmentation, in: IEEE International Symposium on Biomedical Imaging, 2023

Nataliia Molchanova, Raina Vatsal, Francesco La Rosa, Andrey Malinin, Henning Müller, Mark Gales, Cristina Granziera, Mara Graziani and Meritxell Bach Cuadra, Towards Informative Uncertainty Measures for MRI Segmentation in Clinical Practice: Application to Multiple Sclerosis, in: Bern Interpretable Symposium (BIAS) 2023, 2023

Federico Spagnolo, Pedro M. Gordaliza, Po-Jui Lu, Mario Ocampo-Pineda, Xinjie Chen, Esther Ruberte, Matthias Weigel, Tommaso Sirito, Alessandro Cagol, Meritxell Bach Cuadra, Vincent Andrearczyk, Adrien Depeursinge and Cristina Granziera, Foundation Model–Enhanced Classification of Paramagnetic Rim Lesions in Multiple Sclerosis, MSToronto2026 – 10th Joint ACTRIMS-ECTRIMS Meeting, 2026

Andrey Malinin, Andreas Athanasopoulos, Muhamed Barakovic, Meritxell Bach Cuadra, Mark Gales, Cristina Granziera, Mara Graziani, Nikolay Kartashev, Konstantinos Kyriakopoulos, Po-Jui Lu, Nataliia Molchanova, Antonis Nikitakis, Raina Vatsal, Francesco La Rosa, Eli Sivena, Vasileios Tsarsitalidis, Efi Tsompopoulou and Elena Volf, Shifts 2.0: Extending The Dataset of Real Distributional Shifts, arXiv, 2022

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Nataliia Molchanova, Alessandro Cagol, Pedro M. Gordaliza, Mario Ocampo-Pineda, Po-Jui Lu, Matthias Weigel, Chen Xinjie, Adrien Depeursinge, Cristina Granziera, Henning Müller and Meritxell Bach Cuadra, Interpretability of Uncertainty: Exploring Cortical Lesion Segmentation in Multiple Sclerosis, 2024

Pedro M. Gordaliza, Nataliia Molchanova, Maxence Wynen, Pietro Maggi, joost janssen, jaume banus, Alessandro Cagol, Cristina Granziera and Meritxell Bach Cuadra, Towards Longitudinal Characterization of Multiple Sclerosis Atrophy Employing SynthSeg Framework and Normative Modeling, 2024

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Pedro Gordaliza, Jannis Mueller, Charidimos Tsagkas, Reza Rahmanzadeh, Nataliia Molchanova, Francesco La Rosa, Cristina Granziera and Meritxell Bach Cuadra, FLAWS against flaws: Improving Automated Cortical Lesion Segmentation, European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) Conference 2023, 2023

Joe Najm, Pedro Gordaliza, Maxence Wynen, Francesco La Rosa, Nataliia Molchanova, Colin Vanden Bulcke, Anna Stolting, Mario Ocampo-Pineda, Cagol Alessandro, Po-Jui Lu, Weigel Matthias, Martina Absinta, Cristina Granziera, Pietro Maggi and Meritxell Bach Cuadra, Streamline RimNet: A Deep Learning Classification of Paramagnetic Rim Lesions, European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) Conference 2023, 2023

Raina Vatsal, Nataliia Molchanova, Mara Graziani, Andrey Malinin, Po-Jui Lu, Weigel Matthias, Henning Müller, Cristina Granziera, Meritxell Bach Cuadra and Mark Gales, The Normalised Dice Similarity Coefficient for MS: tackling lesion load biases in white matter and cortical lesion segmentation, European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) Conference 2023, 2023

Nataliia Molchanova, Cagol Alessandro, Mario Ocampo-Pineda, Chen Xinjie, Weigel Matthias, Henning Müller, Mara Graziani, Cristina Granziera and Meritxell Bach Cuadra, Deep learning uncertainty quantification of cortical lesions in MP2RAGE for missed lesions discovery, European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS) Conference 2023, 2023

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