Topic: MedGIFT - HES SO Valais Publications

Lorraine Goeuriot, Liadh Kelly, Gareth Jones, Guido Zuccon, Hanna Suominen, Allan Hanbury, Henning Müller, Johannes Leveling and Sanna Salanterä, ShARe\/CLEF eHealth Evaluation Lab 2013, Task 3: Information Retrieval to Address Patients' Questions when Reading Clinical Reports, in: CLEF 2013 working notes, Valencia, Spain, 2013

Paul Blanc-Durand, Axel Van der Gucht, Mario Jreige, Marie Nicod-Lalonde, Marina Silva-Monteiro, John O. Prior, Alban Denys, Adrien Depeursinge and Niklaus Schaefer, Signature of Survival: A 18F-FDG PET Based Whole-Liver Radiomics Analysis Predicts Survival After 90Y-TARE for Hepatocellular Carcinoma (2017), in: OncoTarget, 9:4(4549-4558)

[]: IF 2016 = 5.168

Vincent Andrearczyk, Valentin Oreiller, Julien Fageot, Xavier Montet and Adrien Depeursinge, Solid Spherical Energy (SSE) CNNs for Efficient 3D Medical Image Analysis, in: Irish Machine Vision and Image Processing Conference, pages 37-44, 2019

Manfredo Atzori, Claudio Castellini and Henning Müller, Spatial Registration of Hand Muscle Electromyography Signals, in: 7th International Workshop on Biosignal Interpretation, Como, Italy, 2012

Jayashree Kalpathy-Cramer, Henning Müller, Dina Demner-Fushman and Sameer Antani, Special Issue (2015), in: Computerized Medical Imaging and Graphics, 39

[]: IF 2012=1.664

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Massimo Cafaro, Henning Müller and Nabil Abdennadher, Special Issue of Future Generation Computer Systems with the best papers of the GPC 2009 conference and workshops, GPC 2009, 2011

[]: Impact Factor: 1.476 (2008)

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Thomas Deselaers, Henning Müller and Thomas M. Deserno, Special issue of ImageCLEF (2008), in: Pattern Recognition Letters, 29(1987)

[]: Impact Factor: 0.853 (2007)

Henning Müller, Xiaohong Gao and Shuqian Luo, Special Issue of the conference Medical Imaging and Medical Informatics (2008), in: Computer Methods and Programs in Biomedicine, 93:3(225-226)

[]: Impact Factor: 0.887 (2007)

Adrien Depeursinge, Vincent Andrearczyk, Philip Whybra, Joost van Griethuysen, Henning Müller, Roger Schaer, Martin Vallìères and Alex Zwanenburg, Standardised convolutional filtering for radiomics, 2020

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Alex Zwanenburg, Mahmoud A. Abdalah, Hugo J. W. L. Aerts, Vincent Andrearczyk, Aditya Apte, Saeed Ashrafinia, Roelof J. Beukinga, Ronald Boellaard, Marta Bogowicz, Luca Boldrini, Adrien Depeursinge, Marie-Charlotte Desseroit, Nicola Dinapoli, Cuong Viet Dinh, Sebastian Echegaray, Issam El Naqa, Andriy Y. Fedorov, Roberto Gatta, Robert J. Gillies, Matthias Guckenberger, Nils Gählert, Michael Götz, Mathieu Hatt, Fabian Isensee, Philippe Lambin, Stefan Leger, Ralph T. H. Leijenaar, Jacopo Lenkowicz, Fiona Lippert, Are Losnegård, Klaus H. Maier-Hein, Olivier Morin, Henning Müller, Sandy Napel, Arman Rahmim, Arvind U. K. Rao, Nanna M. Sijtsema, Jairo Socarras Fernandez, Emiliano Spezi, Roel J. H. M Steenbakkers, Stephanie Tanadini-Lang, Daniela Thorwarth, Esther G. C. Troost, Taman Upadhaya, Vincenzo Valentini, Martin Vallìères, Uulke A. van der Heide, Lisanne V. van Dijk, Joost van Griethuysen, Floris H. P. van Velden, Philip Whybra, Christian Richter and Steffen Löck, Standardized quantitative radiomics for high-throughput image-based phenotyping (2020), in: Radiology, 295:2(328-338)

[]: IF 2018 = 7.608

Virginie Uhlmann, Zsuzsanna Püspöki, Adrien Depeursinge, Michael Unser, Daniel Sage and Julien Fageot, Steer'n'Detect: Fast 2D Template Detection with Accurate Orientation Estimation (2022), in: Bioinformatics, 38:11(3146–3148)

[]: IF 2019 = 5.61
[]: Demo page: http://bigwww.epfl.ch/algorithms/steer_n_detect/
[]: Source code: https://github.com/Biomedical-Imaging-Group/Steer-n-Detect
[]: Zenodo: https://zenodo.org/records/10078907

[URL]

Adrien Depeursinge, Zsuzsanna Püspöki, John-Paul Ward and Michael Unser, Steerable Wavelet Machines (SWM): Learning Moving Frames for Texture Classification (2017), in: IEEE Transactions on Image Processing, 26:4(1626-1636)

[]: IF 2015 = 3.735
[]: Matlab code available! click on this entry to download the library.

Bernice Elger, Jimison Iavindrasana, Luigi Lo Iacono, Henning Müller, Nicolas Roduit, Paul Summers and Jessica Wright, Strategies for health data exchange for secondary, cross-institutional clinical research (2010), in: Computer Methods and Programs in Biomedicine, 99:3(230--251)

[]: Impact Factor: 0.887 (2007)

Sandra Mitrovic and Henning Müller, Summarizing Citation Contexts of Scientific Publications, in: CLEF 2015 proceedings, Toulouse, France, 2015

[]: (IF 2005=0.402)

Lorraine Goeuriot, Allan Hanbury, Gareth Jones, Liadh Kelly, Sascha Kriewel, Ivan Martinez Rodriguez, Henning Müller and Miguel A. Tinte, Supporting Collaborative Improvement of Resources in the Khresmoi Health Information System, in: LREC, Istanbul, Turkey, 2012

Xin Zhou, Owen Appleton and Henning Müller, Survey on Grid Knowledge in administrations, in: HealthGrid 2010, Paris, France, pages 3-13, IOS Press, 2010

Sharib Ali, Antonio Foncubierta-Rodríguez, Adrien Depeursinge, Fabrice Meriaudeau, Osman Ratib and Henning Müller, Synchronized slice viewing of similar image series, in: SPIE Medical Imaging: Advanced PACS-based Imaging Informatics and Therapeutic Applications, San Diego, CA, USA, pages 83190K, 2012

William Hersh, Henning Müller, Paul Gorman and Jeffery Jensen, Task analysis for evaluating image retrieval systems in the ImageCLEF biomedical Image Retrieval Task, in: Slice of Life conference on Multimedia in Medical Education (SOL 2005), 2005

Cheickh-Oumar Bagayoko, Henning Müller and Antoine Geissbuhler, Telemedicine Network in French-speaking Africa (RAFT), in: Medical Imaging and Telemedicine, pages 108-113, 2005

Abdel Aziz Taha, Allan Hanbury and Oscar Jimenez del Toro, Test Data and Results of the Automatic Metric Selection Method (2014), in: tuwien.ac.at

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Fan Zhang, Yang Song, Weidong Cai, Adrien Depeursinge and Henning Müller, Text- and content-based medical image retrievals in the VISCERAL retrieval benchmark, Springer, 2017

Oscar Jimenez del Toro, Antonio Foncubierta-Rodríguez, Adrien Depeursinge and Henning Müller, Texture classification of anatomical structures in CT using a context-free machine learning approach, in: SPIE Medical Imaging 2015, pages 94140W-94140W-14, SPIE, 2015

[DOI]
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Antonio Foncubierta-Rodríguez, Pierre-Alexandre Poletti, Alexandra Platon, Alejandro Vargas, Henning Müller and Adrien Depeursinge, Texture Quantification in 4D Dual Energy CT for Pulmonary Embolism Diagnosis, in: MICCAI workshop MCBR-CDS 2012, Nice, France, pages 45-56, 2013

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Adrien Depeursinge, Camille Kurtz, Christopher F. Beaulieu, Sandy Napel and Daniel L. Rubin, Texture-Based Computational Models of Biomedical Tissue in Radiological Images: Unveiling the Invisible, in: 14th Annual Symposium on Biomedical Computation at Stanford, Stanford, CA, USA, 2014

Anaïs Badoual, Michael Unser and Adrien Depeursinge, Texture-Driven Parametric Snakes for Semi-Automatic Image Segmentation (2019), in: Computer Vision and Image Understanding, 188(102793)

[]: IF 2018 = 2.645
[]: Icy plugin and source code: https://bigwww.epfl.ch/demo/texture-snake/

Jimison Iavindrasana, Luigi Lo Iacono, Henning Müller, Ivan Periz, Paul Summers and Jessica Wright, The AneurIST project, in: HealthGrid 2008, pages 161-164, 2008

Thomas Deselaers, Henning Müller, Paul Clough, Hermann Ney and Thomas M. Lehmann, The CLEF 2005 Automatic Medical Image Annotation Task (2007), in: International Journal in Computer Vision, 74:1(51-58)

[]: Impact Factor: 3.657 (2005)

Paul Clough, Henning Müller, Thomas Deselaers, Michael Grubinger, Thomas M. Lehmann, Jeffery Jensen and William Hersh, The CLEF 2005 Cross-Language Image Retrieval Track, in: Working Notes of the 2005 CLEF Workshop, 2005

Paul Clough, Henning Müller, Thomas Deselaers, Michael Grubinger, Thomas M. Lehmann, Jeffery Jensen and William Hersh, The CLEF 2005 Cross-Language Image Retrieval Track, in: Cross Language Evaluation Forum (CLEF 2005), pages 535-557, 2006

[DOI]

Paul Clough, Mark Sanderson and Henning Müller, The CLEF Cross Language Image Retrieval Track (ImageCLEF) 2004, in: 2004 CLEF Working Notes, pages 459-474, 2004

Paul Clough, Henning Müller and Mark Sanderson, The CLEF Cross-Language Image Retrieval Track (ImageCLEF) 2004, in: Multilingual Information Access for Text, Speech and Images: Result of the fifth CLEF evaluation campaign, pages 597-613, Springer, 2005

[DOI]

William Hersh, Henning Müller, Jayashree Kalpathy-Cramer, Eugene Kim and Xin Zhou, The consolidated Medical Image Retrieval Task Test Collection (2009), in: Journal of Digital Imaging, 22(6)(648-655)

[]: Impact Factor: 1.413 (2010)

Oscar Jimenez del Toro, Christoph Aberle, Michael Bach, Roger Schaer, Markus Obmann, Kyriakos Flouris, Ender Konukoglu, Bram Stieltjes, Henning Müller and Adrien Depeursinge, The discriminative power and stability of radiomics features with CT variations: Task-based analysis in an anthropomorphic 3D-printed CT phantom (2021), in: Investigative Radiology, 56:12(820-825)

[]: IF 2020 = 5.156

John Domingue, Federico Alvarez, Susana Avesta, Frances Cleary, Petros Daras, Alex Galis, Anastasius Gavras, Stamatis Karnouskos, Srdjan Krco, Dave Lambert, Man-Sze Li, Volkmar Lotz, Henning Müller, Michael Nilsson, Anne-Marie Sassen, Hans Schaffers, Burkhard Stiller, Georgios Tselentis and Theodore Zahariadis, The future internet, Springer LNCS, 2011

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Alex Galis, Anastasius Gavras, Federico Alvarez, Alessandro Bassi, Michele Bezzi, Laurent Ciavaglia, Frances Cleary, Petros Daras, Hermann De Meer, Panagiotis Demestichas, John Domingue, Theo G. Kanter, Stamatis Karnouskos, Srdjan Krčo, Laurent Lefevre, Jasper Lentjes, Man-Sze Li, Paul Malone, Antonio Manzalini, Volkmar Lotz, Henning Müller, Karsten Oberle, Noel E. O'Connor, Nick Papanikolaou, Dana Petcu, Rahmani Rahim, Danny Raz, Gaël Richards, Elio Salvadori, Susana Sargento, Hans Schaffers, Joan Serrat, Burkhard Stiller, Antonio F. Skarmeta, Kurt Tutschku and Theodore Zahariadis, The Future Internet, Springer, Lecture Notes on Computer Science, 2013

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Federico Alvarez, Frances Cleary, Petros Daras, John Domingue, Alex Galis, Ana Garcia, Anastasius Gavras, Stamatis Karnouskos, Srdjan Krco, Man-Sze Li, Volkmar Lotz, Henning Müller, Elio Salvadori, Anne-Marie Sassen, Hans Schaffers, Burkhard Stiller, Georgios Tselentis, Petra Turkama and Theodore Zahariadis, The Future Internet - From Promises to Reality, in: Future Internet Assembly 2012, pages 7281, 2012

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Michael Grubinger, Paul Clough, Henning Müller and Thomas Deselaers, The IAPR Benchmark: a new evaluation resource for visual information systems, in: International Workshop OntoImage 2006, pages 13-23, 2006

Philip Whybra, Roger Schaer, Adrien Depeursinge, Vincent Andrearczyk, Henning Müller, Martin Vallìères and Alex Zwanenburg, The Image Biomarker Standardisation Initiative (IBSI) On Reproducible Convolutional Radiomics, in: European Society of Radiology, 2022

Philip Whybra, Alex Zwanenburg, Vincent Andrearczyk, Roger Schaer, Aditya P Apte, Alexandre Ayotte, Bhakti Baheti, Spyridon Bakas, Andrea Bettinelli, Ronald Boellaard, Luca Boldrini, Irène Buvat, Gary J R Cook, Florian Dietsche, Nicola Dinapoli, Hubert S Gabryś, Vicky Goh, Matthias Guckenberger, Mathieu Hatt, Mahdi Hosseinzadeh, Aditi Iyer, Jacopo Lenkowicz, Mahdi A L Loutfi, Steffen Löck, Francesca Marturano, Olivier Morin, Christophe Nioche, Fanny Orlhac, Sarthak Pati, Arman Rahmim, Masoud Seyed, Christopher G Rookyard, Mohammad R Salmanpour, Andreas Schindele, Isaac Shiri, Emiliano Spezi, Stephanie Tanadini-Lang, Florent Tixier, Taman Upadhaya, Vincenzo Valentini, Joost J M van Griethuysen, Fereshteh Yousefirizi, Habib Zaidi, Henning Müller, Martin Vallìères and Adrien Depeursinge, The image biomarker standardization initiative: Standardized convolutional filters for reproducible radiomics and enhanced clinical insights (2024), in: Radiology, 310:2

[]: IF 2022: 19.7

[DOI]

Henning Müller and Theodora Tsikrika, The ImageCLEF Benchmark (2010), in: IAPR Newsletter

Henning Müller and Paul Clough, The ImageCLEF benchmark on Multimodal, Multilingual Visual Image Retrieval (2006), in: IAPR Newsletter(13-17)

Ivan Eggel and Henning Müller, The ImageCLEF Management System, in: Proceedings of ImageCLEF 2010, pages 332-339, Springer, 2010

[]: Impact Factor: 0.402 (2005)

Henning Müller and Jayashree Kalpathy-Cramer, The ImageCLEF Medical Competition at ICPR 2010 - the Fusion Task, in: ICPR 2010, pages 3284-3287, Istanbul, Turkey, 2010

Henning Müller, Jayashree Kalpathy-Cramer and William Hersh, The ImageCLEF Medical Image Retrieval Task, in: ImageCLEF – Experimental evaluation of visual information retrieval, pages 221-238, Springer, 2010

Henning Müller and Jayashree Kalpathy-Cramer, The ImageCLEF Medical Retrieval Task at ICPR 2010 - Information Fusion to Combine Visual and Textual Information, in: ICPR 2010, Istanbul, Turkey, pages 99-108, Springer, 2010

William Hersh, Henning Müller, Jayashree Kalpathy-Cramer and Eugene Kim, The ImageCLEFmed Medical Image Retrieval Task Test Collection, in: Society for Imaging Informatics in Medicine (SIIM) 2008, 2008

Pierre Fontaine, Oscar Acosta, Joel Castelli, R. De Crevoisier, Henning Müller and Adrien Depeursinge, The Importance of Feature Aggregation in Radiomics: A Head and Neck Cancer Study (2020), in: Nature Scientific Reports, 10:19679

[]: IF 2019 = 3.998

Guido Zuccon, João Palotti, Lorraine Goeuriot, Liadh Kelly, Mihai Lupu, Pavel Pecina, Henning Müller, Julie Budaher and Antony Deacon, The IR Task at the CLEF eHealth Evaluation Lab 2016: User-centred Health Information Retrieval, in: CLEF working notes, CEUR, 2016

Xin Zhou, Julien Gobeill and Henning Müller, The MedGIFT group at ImageCLEF 2008, in: Springer Lecture Notes in Computer Science 5706, pages 712-718, 2009

[]: Impact Factor: 0.402 (2005)

Xin Zhou, Ivan Eggel and Henning Müller, The medGIFT group at ImageCLEF 2009, in: Working Notes of CLEF 2009 (Cross Language Evaluation Forum), 2009